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Current Opinion in Structural Biology|March 17, 2026
Artificial intelligence methods for protein structure and interaction prediction: Recent advances and challengesAlex Morehead, Jian Liu, Pawan Neupane, et al.
Bioinformatics (Oxford, England)|June 30, 2023
A gated graph transformer for protein complex structure quality assessment and its performance in CASP15Xiao Chen, Alex Morehead, Jian Liu, et al.
Scientific Data|August 3, 2023
DIPS-Plus: The enhanced database of interacting protein structures for interface predictionAlex Morehead, Chen Chen, Ada Sedova, et al.
BMC Bioinformatics|December 29, 2020
Auto3DCryoMap: an automated particle alignment approach for 3D cryo-EM density map reconstructionAdil Al-Azzawi, Anes Ouadou, Ye Duan, et al.
Briefings in Bioinformatics|December 1, 2021
Artificial intelligence in the prediction of protein-ligand interactions: recent advances and future directionsAshwin Dhakal, Cole McKay, John J Tanner, et al.
International Journal of Molecular Sciences|April 25, 2020
Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data AnalysisChen Chen, Jie Hou, John J Tanner, et al.
Nucleic Acids Research|May 8, 2009
NNcon: improved protein contact map prediction using 2D-recursive neural networksAllison N Tegge, Zheng Wang, Jesse Eickholt, et al.
Proteins|June 23, 2009
Prediction of global and local quality of CASP8 models by MULTICOM seriesJianlin Cheng, Zheng Wang, Allison N Tegge, et al.
BMC Molecular Biology|December 3, 2015
Messenger RNA profile analysis deciphers new Esrrb responsive genes in prostate cancer cellsYuan Lu, Jilong Li, Jianlin Cheng, et al.
Scientific Reports|June 11, 2021
DNCON2_Inter: predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learningFarhan Quadir, Raj S Roy, Randal Halfmann, et al.
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