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Bioinformatics (Oxford, England)|June 18, 2005
Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithmsJianlin Cheng, Pierre BaldiMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
MSACompro: improving multiple protein sequence alignment by predicted structural featuresXin Deng, Jianlin ChengNature Communications|July 1, 2024
De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMMNabin Giri, Jianlin ChengBioinformatics Advances|September 5, 2024
Improving protein function prediction by learning and integrating representations of protein sequences and function labelsFrimpong Boadu, Jianlin ChengBriefings in Bioinformatics|June 10, 2024
HiCDiff: single-cell Hi-C data denoising with diffusion modelsYanli Wang, Jianlin ChengBMC Genomics|October 30, 2015
Deciphering the association between gene function and spatial gene-gene interactions in 3D human genome conformationRenzhi Cao, Jianlin ChengMethods in Molecular Biology (Clifton, N.J.)|April 27, 2016
Protein Residue Contacts and Prediction MethodsBadri Adhikari, Jianlin ChengBMC Bioinformatics|August 31, 2017
Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contactsBadri Adhikari, Jianlin ChengBMC Bioinformatics|October 29, 2014
Improving protein fold recognition by random forestTaeho Jo, Jianlin ChengBioinformatics (Oxford, England)|July 15, 2025
FlowDock: Geometric flow matching for generative protein-ligand docking and affinity predictionAlex Morehead, Jianlin ChengPageof 30