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BMC Bioinformatics|October 24, 2015
A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11Jilong Li, Renzhi Cao, Jianlin ChengCommunications Biology|November 17, 2025
Boosting AlphaFold protein tertiary structure prediction through MSA engineering and extensive model sampling and ranking in CASP16Jian Liu, Pawan Neupane, Jianlin ChengBioinformatics (Oxford, England)|July 27, 2023
Single-cell Hi-C data enhancement with deep residual and generative adversarial networksYanli Wang, Zhiye Guo, Jianlin ChengProtein and Peptide Letters|May 21, 2015
An Improved Integration of Template-Based and Template-Free Protein Structure Modeling Methods and its Assessment in CASP11Jilong Li, Badri Adhikari, Jianlin ChengBioinformatics (Oxford, England)|May 7, 2011
APOLLO: a quality assessment service for single and multiple protein modelsZheng Wang, Jesse Eickholt, Jianlin ChengProteins|October 20, 2017
Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learningBadri Adhikari, Jie Hou, Jianlin ChengBMC Proceedings|November 7, 2014
Reconstruction of metabolic pathways by combining probabilistic graphical model-based and knowledge-based methodsQi Qi, Jilong Li, Jianlin ChengBiorxiv : the Preprint Server for Biology|May 4, 2026
Improving AlphaFold3 by Engineering MSA and Template InputsPawan Neupane, Jian Liu, Jianlin ChengBMC Structural Biology|April 16, 2014
Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experimentRenzhi Cao, Zheng Wang, Jianlin ChengBiorxiv : the Preprint Server for Biology|January 30, 2023
Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein functionFrimpong Boadu, Hongyuan Cao, Jianlin ChengPageof 30