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Communications Biology|April 27, 2026
PreStoi allows accurate prediction of protein complex stoichiometry by integrating AlphaFold3 and template informationJian Liu, Pawan Neupane, Jianlin ChengBioinformatics (Oxford, England)|June 5, 2016
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic samplingDebswapna Bhattacharya, Renzhi Cao, Jianlin ChengProteins|December 2, 2005
Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matchingJianlin Cheng, Hiroto Saigo, Pierre BaldiBioinformatics (Oxford, England)|December 12, 2017
DNCON2: improved protein contact prediction using two-level deep convolutional neural networksBadri Adhikari, Jie Hou, Jianlin ChengBMC Genomics|February 24, 2018
A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact dataOluwatosin Oluwadare, Yuxiang Zhang, Jianlin ChengScientific Reports|March 23, 2019
Hierarchical Reconstruction of High-Resolution 3D Models of Large ChromosomesTuan Trieu, Oluwatosin Oluwadare, Jianlin ChengBMC Bioinformatics|March 22, 2013
Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networksZheng Wang, Renzhi Cao, Jianlin ChengBriefings in Bioinformatics|September 18, 2025
Machine learning methods for gene regulatory network inferenceAkshata Hegde, Tom Nguyen, Jianlin ChengResearch Square|June 30, 2025
Boosting AlphaFold Protein Tertiary Structure Prediction through MSA Engineering and Extensive Model Sampling and Ranking in CASP16Jian Liu, Pawan Neupane, Jianlin ChengResearch Square|February 20, 2025
Accurate Prediction of Protein Complex Stoichiometry by Integrating AlphaFold3 and Template InformationJianlin Cheng, Jian Liu, Pawan NeupanePageof 30