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The Journal of Chemical Physics|November 17, 2025
Chirality transfer in lyotropic twist-bend nematicsAnna Ashkinazi, Hemani Chhabra, Anouar El Moumane, et al.Plos Computational Biology|February 4, 2025
Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2Paulina N Smaruj, Fahad Kamulegeya, David R Kelley, et al.Journal of Bioinformatics and Computational Biology|March 30, 2016
History of chromosome rearrangements reflects the spatial organization of yeast chromosomesEkaterina E Khrameeva, Geoffrey Fudenberg, Mikhail S Gelfand, et al.Nature Methods|November 8, 2016
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genomeTsung-Han S Hsieh, Geoffrey Fudenberg, Anton Goloborodko, et al.Cold Spring Harbor Symposia on Quantitative Biology|May 6, 2018
Emerging Evidence of Chromosome Folding by Loop ExtrusionGeoffrey Fudenberg, Nezar Abdennur, Maxim Imakaev, et al.Proceedings of the National Academy of Sciences of the United States of America|July 4, 2018
Chromatin organization by an interplay of loop extrusion and compartmental segregationJohannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, et al.Biorxiv : the Preprint Server for Biology|May 13, 2026
The ChIP-FRiP pipeline quantifies co-binding and reveals how antibody background contributes to cohesin ChIP-seq patternsYao Xiao, Erika C Anderson, Hadi Rahmaninejad, et al.Journal of Chemical Theory and Computation|November 9, 2020
Computing the Elastic Mechanical Properties of Rodlike DNA NanostructuresHemani Chhabra, Garima Mishra, Yijing Cao, et al.Nature Communications|October 24, 2019
Principles of meiotic chromosome assembly revealed in S. cerevisiaeStephanie A Schalbetter, Geoffrey Fudenberg, Jonathan Baxter, et al.Cell Reports|May 24, 2016
Formation of Chromosomal Domains by Loop ExtrusionGeoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, et al.Pageof 6