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Genome Research|April 10, 2023
The motif composition of variable number tandem repeats impacts gene expressionTsung-Yu Lu, Paulina N Smaruj, Geoffrey Fudenberg, et al.Nature Communications|July 13, 2023
Biophysical ordering transitions underlie genome 3D re-organization during cricket spermiogenesisGuillermo A Orsi, Maxime M C Tortora, Béatrice Horard, et al.Bioinformatics (Oxford, England)|February 25, 2024
Bioframe: operations on genomic intervals in Pandas dataframes, Nezar Abdennur, Geoffrey Fudenberg, et al.Science (New York, N.Y.)|November 9, 2013
Organization of the mitotic chromosomeNatalia Naumova, Maxim Imakaev, Geoffrey Fudenberg, et al.Biorxiv : the Preprint Server for Biology|February 24, 2023
Pairtools: from sequencing data to chromosome contacts, Nezar Abdennur, Geoffrey Fudenberg, et al.Plos Computational Biology|May 29, 2024
Pairtools: From sequencing data to chromosome contacts, Nezar Abdennur, Geoffrey Fudenberg, et al.Nature Methods|September 4, 2012
Iterative correction of Hi-C data reveals hallmarks of chromosome organizationMaxim Imakaev, Geoffrey Fudenberg, Rachel Patton McCord, et al.Nature Cell Biology|August 22, 2017
SMC complexes differentially compact mitotic chromosomes according to genomic contextStephanie Andrea Schalbetter, Anton Goloborodko, Geoffrey Fudenberg, et al.Nucleic Acids Research|June 27, 2026
Antibody-trapping presents a widespread pitfall for microscopy and genomics in the nucleusKonrad Chudzik, Yuko Sato, Xingchi Yan, et al.Nature|June 7, 2019
Heterochromatin drives compartmentalization of inverted and conventional nucleiMartin Falk, Yana Feodorova, Natalia Naumova, et al.Pageof 6