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Systematic Biology|March 2, 2016
Gene Tree Discordance Causes Apparent Substitution Rate VariationFábio K Mendes, Matthew W HahnMolecular Biology and Evolution|September 12, 2009
Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplicationsDaniel R Schrider, Matthew W HahnGenetics|November 19, 2011
Inferring the history of interchromosomal gene transposition in Drosophila using n-dimensional parsimonyMira V Han, Matthew W HahnMolecular Biology and Evolution|February 10, 2012
Sex chromosomes evolved from independent ancestral linkage groups in winged insectsJames B Pease, Matthew W HahnEvolution; International Journal of Organic Evolution|July 30, 2013
More accurate phylogenies inferred from low-recombination regions in the presence of incomplete lineage sortingJames B Pease, Matthew W HahnGenetics|June 5, 2025
Estimating recombination using only the allele frequency spectrumMatthew W Hahn, Sarthak R MishraMolecular Ecology|August 10, 2017
Speciation as a sieve for ancestral polymorphismRafael F Guerrero, Matthew W HahnSystematic Biology|October 4, 2017
Why Concatenation Fails Near the Anomaly ZoneFábio K Mendes, Matthew W HahnPlos Genetics|November 8, 2021
The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoesMark S Hibbins, Matthew W HahnGenetics|January 24, 2019
The Timing and Direction of Introgression Under the Multispecies Network CoalescentMark S Hibbins, Matthew W HahnPageof 23