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Plos One|April 16, 2014
Combining distance matrices on identical taxon sets for multi-gene analysis with singular value decompositionMelanie Abeysundera, Toby Kenney, Chris Field, et al.Molecular Biology and Evolution|September 2, 2011
Phylogenetic analysis based on spectral methodsMelanie Abeysundera, Chris Field, Hong GuStatistical Applications in Genetics and Molecular Biology|October 2, 2012
Hessian calculation for phylogenetic likelihood based on the pruning algorithm and its applicationsToby Kenney, Hong GuMicrobiome|September 2, 2017
Learning Microbial Community Structures with Supervised and Unsupervised Non-negative Matrix FactorizationYun Cai, Hong Gu, Toby KenneyNeural Networks : the Official Journal of the International Neural Network Society|April 21, 2026
Neural network pruning and simultaneous feature and structure selectionXinyue Zhang, Hong Gu, Toby KenneyBMC Bioinformatics|October 13, 2020
Application of OU processes to modelling temporal dynamics of the human microbiome, and calculating optimal sampling schemesToby Kenney, Junqiu Gao, Hong GuBiometrics|October 2, 2020
Poisson PCA: Poisson measurement error corrected PCA, with application to microbiome dataToby Kenney, Hong Gu, Tianshu HuangStatistics in Medicine|October 17, 2023
Rank selection for non-negative matrix factorizationYun Cai, Hong Gu, Toby KenneyBMC Bioinformatics|June 22, 2019
Testing adequacy for DNA substitution modelsWei Chen, Toby Kenney, Joseph Bielawski, et al.Systematic Biology|July 29, 2022
The Community Coevolution Model with Application to the Study of Evolutionary Relationships between Genes Based on Phylogenetic ProfilesChaoyue Liu, Toby Kenney, Robert G Beiko, et al.Pageof 106