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IEEE Transactions on Cybernetics|September 24, 2025
Self Learning Fuzzy Logic-Based Robust Control of Robotic Manipulators Driven With BLDC Motors: A Task Space Control ApproachBayram Melih Yilmaz, Sukru Unver, Erman Selim, et al.Bioinformatics (Oxford, England)|June 28, 2024
A learned score function improves the power of mass spectrometry database searchVarun Ananth, Justin Sanders, Melih Yilmaz, et al.Cancer Medicine|July 13, 2021
Diverse patient trajectories during cytotoxic chemotherapy: Capturing longitudinal patient-reported outcomesAmee D Azad, Melih Yilmaz, Selen Bozkurt, et al.Journal of Proteome Research|August 30, 2024
Accounting for Digestion Enzyme Bias in CasanovoCarlo Melendez, Justin Sanders, Melih Yilmaz, et al.Iscience|August 7, 2026
A systematic evaluation framework for universal antibody-antigen binding affinity prediction and candidate recommendationYunrui Li, Yue Zhao, Kemal Sonmez, et al.Biopreservation and Biobanking|September 20, 2022
The Combined Effect of Melatonin Implant and Removal of Buck Seminal Plasma on Cryopreservation During the Nonbreeding SeasonBurcu Ustuner, Hakan Ustuner, Elif Gokce, et al.NPJ Systems Biology and Applications|April 26, 2026
Context-aware multi-property antibody predictor: a novel framework integrating text and protein language modelsLuca Giancardo, Melih Yilmaz, Edward Lee, et al.Nature Communications|July 30, 2024
Sequence-to-sequence translation from mass spectra to peptides with a transformer modelMelih Yilmaz, William E Fondrie, Wout Bittremieux, et al.Mass Spectrometry Reviews|November 29, 2024
Deep Learning Methods for De Novo Peptide SequencingWout Bittremieux, Varun Ananth, William E Fondrie, et al.Journal of Proteome Research|December 30, 2025
Improvements to Casanovo, a Deep Learning De Novo Peptide SequencerGwenneth Straub, Varun Ananth, William E Fondrie, et al.Pageof 2