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Proteins|April 4, 2024
Allosteric modulation of fluorescence revealed by hydrogen bond dynamics in a genetically encoded maltose biosensorMelike Berksoz, Canan AtilganJournal of Chemical Information and Modeling|December 27, 2024
Ranking Single Fluorescent Protein-Based Calcium Biosensor Performance by Molecular Dynamics SimulationsMelike Berksoz, Canan AtilganJournal of Molecular Biology|May 30, 2025
Multiply Perturbed Response to Disclose Allosteric Control of Conformational Change: Application to Fluorescent Biosensor DesignMelike Berksoz, Ali Rana Atilgan, Burak Kocuk, et al.Bio-Protocol|July 10, 2026
Multiply Perturbed Response: A Computational Protocol to Identify Cooperative Allosteric Residue Combinations Driving Protein Conformational TransitionsKübranur Kazan, Melike Berksoz, Burak Kocuk, et al.Advances in Protein Chemistry and Structural Biology|August 29, 2018
Computational Methods for Efficient Sampling of Protein Landscapes and Disclosing Allosteric RegionsCanan AtilganPhysical Chemistry Chemical Physics : PCCP|March 10, 2016
Predicting long term cooperativity and specific modulators of receptor interactions in human transferrin from dynamics within a single microstateHaleh Abdizadeh, Canan AtilganCurrent Opinion in Structural Biology|September 26, 2021
Computational strategies for protein conformational ensemble detectionAli Rana Atilgan, Canan AtilganBriefings in Functional Genomics|July 20, 2012
Local motifs in proteins combine to generate global functional movesAli Rana Atilgan, Canan AtilganPlos Computational Biology|October 24, 2009
Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding proteinCanan Atilgan, Ali Rana AtilganThe Journal of Chemical Physics|October 2, 2009
Surfactant formation efficiency of fluorocarbon-hydrocarbon oligomers in supercritical CO2Hatice Can, Gokhan Kacar, Canan AtilganPageof 6