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Proteins|July 2, 2004
Physical scoring function based on AMBER force field and Poisson-Boltzmann implicit solvent for protein structure predictionMeng-Juei Hsieh, Ray LuoThe Journal of Physical Chemistry. B|February 6, 2010
Balancing simulation accuracy and efficiency with the Amber united atom force fieldMeng-Juei Hsieh, Ray LuoJournal of Molecular Modeling|December 4, 2010
Exploring a coarse-grained distributive strategy for finite-difference Poisson-Boltzmann calculationsMeng-Juei Hsieh, Ray LuoJournal of Chemical Theory and Computation|April 12, 2014
Performance of Nonlinear Finite-Difference Poisson-Boltzmann SolversQin Cai, Meng-Juei Hsieh, Jun Wang, et al.Journal of Molecular Graphics & Modelling|April 22, 2004
Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forcesEdward Z Wen, Meng-Juei Hsieh, Peter A Kollman, et al.The Journal of Physical Chemistry. B|May 23, 2012
Development of polarizable models for molecular mechanical calculations. 4. van der Waals parametrizationJunmei Wang, Piotr Cieplak, Jie Li, et al.The Journal of Physical Chemistry. B|June 21, 2012
Development of polarizable models for molecular mechanical calculations. 3. Polarizable water models conforming to Thole polarization screening schemesJun Wang, Piotr Cieplak, Qin Cai, et al.The Journal of Physical Chemistry. B|June 30, 2006
New-generation amber united-atom force fieldLijiang Yang, Chun-Hu Tan, Meng-Juei Hsieh, et al.Journal of Chemical Information and Modeling|December 15, 2018
Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing UnitsRuxi Qi, Ray LuoThe Journal of Chemical Physics|December 10, 2017
Exploring a multi-scale method for molecular simulation in continuum solvent model: Explicit simulation of continuum solvent as an incompressible fluidLi Xiao, Ray LuoPageof 15