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Biophysical Journal|October 11, 2005
In silico studies of the African swine fever virus DNA polymerase X support an induced-fit mechanismBenedetta A Sampoli Benítez, Karunesh Arora, Tamar Schlick
The Journal of Physical Chemistry. B|May 25, 2016
Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory ElementsGavin D Bascom, Karissa Y Sanbonmatsu, Tamar Schlick
Methods (San Diego, Calif.)|April 1, 2019
An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structuresSwati Jain, Sera Saju, Louis Petingi, et al.
Plos One|September 5, 2014
RNA graph partitioning for the discovery of RNA modularity: a novel application of graph partition algorithm to biologyNamhee Kim, Zhe Zheng, Shereef Elmetwaly, et al.
Journal of Computational Chemistry|December 17, 2002
Inherent speedup limitations in multiple time step/particle mesh Ewald algorithmsDanny Barash, Linjing Yang, Xiaoliang Qian, et al.
Journal of Molecular Biology|August 8, 2009
Tertiary motifs revealed in analyses of higher-order RNA junctionsChristian Laing, Segun Jung, Abdul Iqbal, et al.
Biophysical Journal|October 23, 2020
Structure-altering mutations of the SARS-CoV-2 frameshifting RNA elementTamar Schlick, Qiyao Zhu, Swati Jain, et al.
Biorxiv : the Preprint Server for Biology|April 8, 2024
Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analysesAbhishek Dey, Shuting Yan, Tamar Schlick, et al.
Biophysical Journal|September 3, 2025
What are chromatin fiber topologies for regular nucleosome linker spacing? The influence of 10n and 10n+5 linker lengths explored by mesoscale modelingZilong Li, Stephanie Portillo-Ledesma, Moshe Janani, et al.
International Journal of Molecular Sciences|April 13, 2023
Effect of Single-Residue Mutations on CTCF Binding to DNA: Insights from Molecular Dynamics SimulationsAlbert Mao, Carrie Chen, Stephanie Portillo-Ledesma, et al.
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