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Elife|January 19, 2024
Regulation of chromatin architecture by transcription factor bindingStephanie Portillo-Ledesma, Suckwoo Chung, Jill Hoffman, et al.Genes|July 26, 2018
Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA SubmotifsSwati Jain, Cigdem S Bayrak, Louis Petingi, et al.RNA (New York, N.Y.)|October 30, 2008
Annotation of tertiary interactions in RNA structures reveals variations and correlationsYurong Xin, Christian Laing, Neocles B Leontis, et al.Bioinformatics and Biology Insights|October 9, 2009
Estimating the fraction of non-coding RNAs in mammalian transcriptomesYurong Xin, Giulio Quarta, Hin Hark Gan, et al.Nucleic Acids Research|June 8, 2014
Dynamic condensation of linker histone C-terminal domain regulates chromatin structureAntoni Luque, Rosana Collepardo-Guevara, Sergei Grigoryev, et al.The Journal of Chemical Physics|March 6, 2025
Incorporating multiscale methylation effects into nucleosome-resolution chromatin models for simulating mesoscale fibersZilong Li, Stephanie Portillo-Ledesma, Moshe Janani, et al.Biophysical Journal|May 20, 2026
Open Questions on Viral Frameshifting: Exploiting Structural Plasticity of the Frameshifting Element for Therapeutic InterventionStephanie Portillo-Ledesma, Samuel Lee, Alain Laederach, et al.Journal of Molecular Biology|August 24, 2004
Candidates for novel RNA topologiesNamhee Kim, Nahum Shiffeldrim, Hin Hark Gan, et al.Journal of Molecular Biology|September 8, 2009
Analysis of riboswitch structure and function by an energy landscape frameworkGiulio Quarta, Namhee Kim, Joseph A Izzo, et al.Biorxiv : the Preprint Server for Biology|October 9, 2023
Regulation of Chromatin Architecture by Transcription Factor BindingStephanie Portillo-Ledesma, Suckwoo Chung, Jill Hoffman, et al.Pageof 18