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Life Science Alliance|April 14, 2019
A network of human functional gene interactions from knockout fitness screens in cancer cellsEiru Kim, Merve Dede, Walter F Lenoir, et al.
Cancers|March 14, 2026
Early Postoperative PSA Dynamics and Prognostic Implications After Radical ProstatectomyYukun Tan, Qing H Meng, Merve Dede, et al.
Biorxiv : the Preprint Server for Biology|July 10, 2026
TCR-FramePose: a local-frame representation for decomposing global docking and CDR3 loop geometry in TCR-pMHC recognitionKun Hee Kim, Xianli Jiang, Qing Ye, et al.
Matrix Biology : Journal of the International Society for Matrix Biology|June 17, 2022
Systematic Analysis of Actively Transcribed Core Matrisome Genes Across Tissues and Cell PhenotypesTristen V Tellman, Merve Dede, Vikram A Aggarwal, et al.
Nature Communications|August 12, 2023
Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFluxYuefan Huang, Vakul Mohanty, Merve Dede, et al.
Biorxiv : the Preprint Server for Biology|March 3, 2025
Agent-based modeling of cellular dynamics in adoptive cell therapyYujia Wang, Stefano Casarin, May Daher, et al.
Pediatric Research|April 14, 2025
Expression of BCL-2 and Laminin in Rectosigmoid Hirschsprung Disease: Correlations with Hirschsprung-Associated EnterocolitisMerve Dede, Fatih Celik, Ebrucan Bulut, et al.
NPJ Artificial Intelligence|January 30, 2026
AI-powered Immune Cell Knowledge Graph (ICKG) with granular immune contexts enables immune program interpretationShan He, Yukun Tan, Qing Ye, et al.
Communications Biology|February 11, 2026
Agent-based modeling of cellular dynamics in adoptive cell therapyYujia Wang, Stefano Casarin, May Daher, et al.
Nucleic Acids Research|September 1, 2016
RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing dataMercedeh Movassagh, Nawaf Alomran, Prakriti Mudvari, et al.
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