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Genome Biology|May 21, 2024
HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing dataMatthew A Myers, Brian J Arnold, Vineet Bansal, et al.Nature Methods|October 31, 2024
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomicsCong Ma, Metin Balaban, Jingxian Liu, et al.Msystems|May 3, 2018
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical InformationStefan Janssen, Daniel McDonald, Antonio Gonzalez, et al.The ISME Journal|September 5, 2025
Net rate of lateral gene transfer in marine prokaryoplanktonRamunas Stepanauskas, Julia M Brown, Shayesteh Arasti, et al.Science (New York, N.Y.)|September 26, 2015
Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"Joel Cracraft, Peter Houde, Simon Y W Ho, et al.Genome Biology and Evolution|January 7, 2016
The Interrelationships of Placental Mammals and the Limits of Phylogenetic InferenceJames E Tarver, Mario Dos Reis, Siavash Mirarab, et al.Nature Communications|May 20, 2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, et al.Proceedings of the National Academy of Sciences of the United States of America|April 1, 2024
A region of suppressed recombination misleads neoavian phylogenomicsSiavash Mirarab, Iker Rivas-González, Shaohong Feng, et al.Nature|April 1, 2024
Complexity of avian evolution revealed by family-level genomesJosefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, et al.American Journal of Botany|April 1, 2018
A roadmap for global synthesis of the plant tree of lifeWolf L Eiserhardt, Alexandre Antonelli, Dominic J Bennett, et al.Pageof 12