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Bioinformatics (Oxford, England)|January 3, 2022
Completing gene trees without species trees in sub-quadratic timeUyen Mai, Siavash Mirarab
BMC Genomics|April 18, 2020
Forcing external constraints on tree inference using ASTRALMaryam Rabiee, Siavash Mirarab
Methods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPPTandy Warnow, Siavash Mirarab
Bioinformatics (Oxford, England)|June 27, 2022
QuCo: quartet-based co-estimation of species trees and gene treesMaryam Rabiee, Siavash Mirarab
Molecular Biology and Evolution|May 19, 2016
Fast Coalescent-Based Computation of Local Branch Support from Quartet FrequenciesErfan Sayyari, Siavash Mirarab
Systematic Biology|November 23, 2017
A Two-State Model of Tree Evolution and Its Applications to Alu RetrotranspositionNiema Moshiri, Siavash Mirarab
Bioinformatics (Oxford, England)|June 15, 2015
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genesSiavash Mirarab, Tandy Warnow
Bioinformatics (Oxford, England)|September 12, 2022
ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family treesChao Zhang, Siavash Mirarab
Methods in Molecular Biology (Clifton, N.J.)|September 9, 2022
Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene PhylogeniesQiyun Zhu, Siavash Mirarab
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