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Science (New York, N.Y.)|December 16, 2014
Statistical binning enables an accurate coalescent-based estimation of the avian treeSiavash Mirarab, Md Shamsuzzoha Bayzid, Bastien Boussau, et al.
Molecular Ecology Resources|April 24, 2026
SPrUCE: Utilizing Ultraconserved Elements of DNA for Population-Level Genetic Diversity EstimationDaira Melendez, Ali Osman Berk Şapcı, Vineet Bafna, et al.
Genome Biology|June 17, 2015
Ultra-large alignments using phylogeny-aware profilesNam-Phuong D Nguyen, Siavash Mirarab, Keerthana Kumar, et al.
Molecular Ecology|June 17, 2020
Beyond DNA barcoding: The unrealized potential of genome skim data in sample identificationKristine Bohmann, Siavash Mirarab, Vineet Bafna, et al.
Biorxiv : the Preprint Server for Biology|June 12, 2026
DipSkmer: Reference-free population genomics with diploid genome skimsEduardo Charvel, Homėre J Alves Monteiro, Siavash Mirarab, et al.
Bioinformatics (Oxford, England)|November 6, 2018
FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequencesNiema Moshiri, Manon Ragonnet-Cronin, Joel O Wertheim, et al.
Bioinformatics (Oxford, England)|June 13, 2024
Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approachYueyu Jiang, Daniel McDonald, Daniela Perry, et al.
Molecular Phylogenetics and Evolution|June 21, 2020
More is needed-Thousands of loci are required to elucidate the relationships of the 'flowers of the sea' (Sabellida, Annelida)Ekin Tilic, Erfan Sayyari, Josefin Stiller, et al.
Systematic Biology|March 10, 2026
Branch Length Transforms using Optimal Tree Metric MatchingShayesteh Arasti, Puoya Tabaghi, Yasamin Tabatabaee, et al.
Bioinformatics (Oxford, England)|November 1, 2014
TIPP: taxonomic identification and phylogenetic profilingNam-Phuong Nguyen, Siavash Mirarab, Bo Liu, et al.
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