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Arxiv|May 2, 2025
In-Context Learning can distort the relationship between sequence likelihoods and biological fitnessPranav Kantroo, Günter P Wagner, Benjamin B MachtaArxiv|July 23, 2024
Pseudo-perplexity in One Fell Swoop for Protein Fitness EstimationPranav Kantroo, Günter P Wagner, Benjamin B MachtaArxiv|November 28, 2024
High fitness paths can connect proteins with low sequence overlapPranav Kantroo, Günter P Wagner, Benjamin B MachtaProceedings of the National Academy of Sciences of the United States of America|October 2, 2021
Surface densities prewet a near-critical membraneMason Rouches, Sarah L Veatch, Benjamin B MachtaBiorxiv : the Preprint Server for Biology|July 19, 2024
Pseudo-perplexity in One Fell Swoop for Protein Fitness EstimationPranav Kantroo, Günter P Wagner, Benjamin B MachtaPhysical Review Letters|April 7, 2010
Why are nonlinear fits to data so challenging?Mark K Transtrum, Benjamin B Machta, James P SethnaNature Communications|January 16, 2021
Irreversibility in dynamical phases and transitionsDaniel S Seara, Benjamin B Machta, Michael P MurrellPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|April 27, 2011
Geometry of nonlinear least squares with applications to sloppy models and optimizationMark K Transtrum, Benjamin B Machta, James P SethnaPhysical Review Letters|October 4, 2012
Critical Casimir forces in cellular membranesBenjamin B Machta, Sarah L Veatch, James P SethnaBiophysical Journal|December 24, 2013
Liquid general anesthetics lower critical temperatures in plasma membrane vesiclesEllyn Gray, Joshua Karslake, Benjamin B Machta, et al.Pageof 5