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Current Opinion in Biomedical Engineering|July 24, 2023
AI Models for Protein Design are Driving Antibody EngineeringMichael Chungyoun, Jeffrey J GrayBiorxiv : the Preprint Server for Biology|June 22, 2026
ProtAff: Protein Binding Affinity Prediction via LoRA-Finetuned ESM-2Lee-Shin Chu, Jeff Vogt, Michael Chungyoun, et al.Biorxiv : the Preprint Server for Biology|April 8, 2025
Anti-citrullinated protein antibodies arise during affinity maturation of germline antibodies to carbamylated proteins in rheumatoid arthritisMarta Escarra-Senmarti, Michael Chungyoun, Dylan Ferris, et al.Biorxiv : the Preprint Server for Biology|January 7, 2026
Fitness Landscape for Antibodies 2: Benchmarking Reveals That Protein AI Models Cannot Yet Consistently Predict Developability PropertiesMichael Chungyoun, Jeffrey GrayJournal of Agricultural and Food Chemistry|February 14, 2024
Thermostability Enhancement of GH 62 α-l-Arabinofuranosidase by Directed Evolution and Rational DesignManoela Martins, Alberto M Dos Santos, Clauber H S da Costa, et al.Biomaterials|August 2, 2020
Enzymatic protection and biocompatibility screening of enzyme-loaded polymeric nanoparticles for neurotherapeutic applicationsRick Liao, Jessica Pon, Michael Chungyoun, et al.Current Opinion in Structural Biology|March 21, 2006
High-resolution protein-protein dockingJeffrey J GrayCurrent Opinion in Structural Biology|April 23, 2004
The interaction of proteins with solid surfacesJeffrey J GrayJournal of Molecular Biology|July 22, 2008
Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensemblesSidhartha Chaudhury, Jeffrey J GrayPlos Computational Biology|January 26, 2010
SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology modelsAroop Sircar, Jeffrey J GrayPageof 18