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Advances in Experimental Medicine and Biology|December 14, 2011
Leveraging modeling approaches: reaction networks and rulesMichael L Blinov, Ion I MoraruProceedings. IEEE International Symposium on Bioinformatics and Bioengineering|September 28, 2011
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular ComplexesMichael L Blinov, Ion I MoraruBMC Biology|November 23, 2012
Logic modeling and the ridiculome under the rugMichael L Blinov, Ion I MoraruProceedings. IEEE International Conference on Bioinformatics and Biomedicine|September 24, 2010
Kinetic Modeling using BioPAX ontologyOliver Ruebenacker, Ion I Moraru, James C Schaff, et al.Frontiers in Molecular Biosciences|December 8, 2025
Visualizing mechanistic models by integrating site-specific molecular details into reaction networksDan Vasilescu, James C Schaff, Ion I Moraru, et al.Bioinformatics (Oxford, England)|August 7, 2016
Rule-based modeling with Virtual CellJames C Schaff, Dan Vasilescu, Ion I Moraru, et al.Frontiers in Network Physiology|May 22, 2023
Dynamic model assuming mutually inhibitory biomarkers of frailty suggests bistability with contrasting mobility phenotypesNathan Schaumburger, Joel Pally, Ion I Moraru, et al.Nucleic Acids Research|May 21, 2021
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formatsBilal Shaikh, Gnaneswara Marupilla, Mike Wilson, et al.Biophysical Journal|October 6, 2017
Compartmental and Spatial Rule-Based Modeling with Virtual CellMichael L Blinov, James C Schaff, Dan Vasilescu, et al.Physiology (Bethesda, Md.)|May 13, 2005
Intracellular signaling: spatial and temporal controlIon I Moraru, Leslie M LoewPageof 6