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Methods in Molecular Biology (Clifton, N.J.)|March 4, 2020
Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing DataGregor Sturm, Francesca Finotello, Markus List
Microbial Genomics|August 2, 2022
Namco: a microbiome explorerAlexander Dietrich, Monica Steffi Matchado, Maximilian Zwiebel, et al.
Nucleic Acids Research|May 2, 2017
Interactive microbial distribution analysis using BioAtlasJesper Beltoft Lund, Markus List, Jan Baumbach
Briefings in Bioinformatics|March 6, 2024
Cracking the black box of deep sequence-based protein-protein interaction predictionJudith Bernett, David B Blumenthal, Markus List
NAR Genomics and Bioinformatics|September 13, 2021
Tissue heterogeneity is prevalent in gene expression studiesGregor Sturm, Markus List, Jitao David Zhang
Nucleic Acids Research|April 17, 2016
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region setsFelipe Albrecht, Markus List, Christoph Bock, et al.
Bioinformatics (Oxford, England)|March 24, 2017
DeepBlueR: large-scale epigenomic analysis in RFelipe Albrecht, Markus List, Christoph Bock, et al.
Methods in Cell Biology|July 19, 2025
Next-generation deconvolution of the tumor microenvironment with omnideconvLorenzo Merotto, Alexander Dietrich, Markus List, et al.
Bioinformatics (Oxford, England)|April 17, 2018
JAMI: fast computation of conditional mutual information for ceRNA network analysisAndrea Hornakova, Markus List, Jilles Vreeken, et al.
Briefings in Bioinformatics|March 30, 2021
On the limits of active module identificationOlga Lazareva, Jan Baumbach, Markus List, et al.
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