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Systematic Biology|January 24, 2026
Inferring branch-specific rates of lineage diversification under the birth-death-shift processSebastian Höhna, William A Freyman, Zachary Nolen, et al.EMBO Reports|August 7, 2004
A stop-EGFP transgenic mouse to detect clonal cell lineages generated by mutationSimon Ro, Bruce RannalaSystematic Biology|March 15, 2005
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution modelsJohn Huelsenbeck, Bruce RannalaProceedings of the National Academy of Sciences of the United States of America|April 4, 2009
Population genomic inference of recombination rates and hotspotsYing Wang, Bruce RannalaMolecular Biology and Evolution|October 3, 2014
Unguided species delimitation using DNA sequence data from multiple LociZiheng Yang, Bruce RannalaBiorxiv : the Preprint Server for Biology|January 9, 2026
Improved Bayesian inference of hybrids using genome sequencesSneha Chakraborty, Bruce RannalaGenetics|August 22, 2003
Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple lociBruce Rannala, Ziheng YangGenetics|August 16, 2011
Bayesian population genomic inference of crossing over and gene conversionBadri Padhukasahasram, Bruce RannalaNature Reviews. Genetics|March 30, 2012
Molecular phylogenetics: principles and practiceZiheng Yang, Bruce RannalaSystematic Biology|March 23, 2006
Inferring complex DNA substitution processes on phylogenies using uniformization and data augmentationLigia Mateiu, Bruce RannalaPageof 9