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Cell|July 11, 2008
Seeking a new biology through text miningAndrey Rzhetsky, Michael Seringhaus, Mark Gerstein
Nucleic Acids Research|May 2, 2006
Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiaeMichael Seringhaus, Anuj Kumar, John Hartigan, et al.
Genome Research|August 11, 2006
Predicting essential genes in fungal genomesMichael Seringhaus, Alberto Paccanaro, Anthony Borneman, et al.
BMC Genomics|January 2, 2009
Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarraysMichael Seringhaus, Joel Rozowsky, Thomas Royce, et al.
Annual Review of Biochemistry|June 11, 2004
Analyzing cellular biochemistry in terms of molecular networksYu Xia, Haiyuan Yu, Ronald Jansen, et al.
Bioinformatics (Oxford, England)|January 15, 2011
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excisionAlexej Abyzov, Mark Gerstein
BMC Bioinformatics|January 13, 2004
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structuresVadim Alexandrov, Mark Gerstein
Proteins|March 30, 2004
A method using active-site sequence conservation to find functional shifts in protein families: application to the enzymes of central metabolism, leading to the identification of an anomalous isocitrate dehydrogenase in pathogensRajdeep Das, Mark Gerstein
Current Opinion in Microbiology|September 29, 2004
Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network predictionRonald Jansen, Mark Gerstein
Bioinformatics (Oxford, England)|July 25, 2024
Representing core gene expression activity relationships using the latent structure implicit in Bayesian networksJiahao Gao, Mark Gerstein
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