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Nucleic Acids Research|December 13, 2006
Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection toolHaiyuan Yu, Katherine Nguyen, Tom Royce, et al.BMC Genomics|January 2, 2009
Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarraysMichael Seringhaus, Joel Rozowsky, Thomas Royce, et al.Science (New York, N.Y.)|May 3, 2008
The transcriptional landscape of the yeast genome defined by RNA sequencingUgrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Genome Biology|January 26, 2013
Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programsMichelle Kudron, Wei Niu, Zhi Lu, et al.Bioinformatics (Oxford, England)|December 8, 2010
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summariesLukas Habegger, Andrea Sboner, Tara A Gianoulis, et al.Genes & Development|February 2, 2006
Target hub proteins serve as master regulators of development in yeastAnthony R Borneman, Justine A Leigh-Bell, Haiyuan Yu, et al.Functional & Integrative Genomics|July 20, 2007
Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platformsAnthony R Borneman, Zhengdong D Zhang, Joel Rozowsky, et al.Nature|September 17, 2004
Genomic analysis of regulatory network dynamics reveals large topological changesNicholas M Luscombe, M Madan Babu, Haiyuan Yu, et al.Genome Biology|May 16, 2007
Tilescope: online analysis pipeline for high-density tiling microarray dataZhengdong D Zhang, Joel Rozowsky, Hugo Y K Lam, et al.Genome Research|June 15, 2007
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regionsZhengdong D Zhang, Alberto Paccanaro, Yutao Fu, et al.Pageof 85