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Biorxiv : the Preprint Server for Biology|February 20, 2025
Thermodynamic principles link <i>in vitro</i> transcription factor affinities to single-molecule chromatin states in cellsJulia M Schaepe, Torbjörn Fries, Benjamin R Doughty, et al.
Elife|June 9, 2022
Dynamic spreading of chromatin-mediated gene silencing and reactivation between neighboring genes in single cellsSarah Lensch, Michael H Herschl, Connor H Ludwig, et al.
Biorxiv : the Preprint Server for Biology|October 24, 2023
The H3.3 K36M oncohistone disrupts the establishment of epigenetic memory through loss of DNA methylationJoydeb Sinha, Jan F Nickels, Abby R Thurm, et al.
Molecular Cell|October 5, 2024
The H3.3K36M oncohistone disrupts the establishment of epigenetic memory through loss of DNA methylationJoydeb Sinha, Jan F Nickels, Abby R Thurm, et al.
Cell|November 27, 2025
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cellsJulia M Schaepe, Torbjörn Fries, Benjamin R Doughty, et al.
Biorxiv : the Preprint Server for Biology|October 24, 2023
Single-cell chromatin state transitions during epigenetic memory formationTaihei Fujimori, Carolina Rios-Martinez, Abby R Thurm, et al.
Nature|November 20, 2024
Single-molecule states link transcription factor binding to gene expressionBenjamin R Doughty, Michaela M Hinks, Julia M Schaepe, et al.
Biorxiv : the Preprint Server for Biology|February 14, 2024
Single-molecule chromatin configurations link transcription factor binding to expression in human cellsBenjamin R Doughty, Michaela M Hinks, Julia M Schaepe, et al.
Nature|May 19, 2026
A multi-agent system for automating scientific discoveryAli Essam Ghareeb, Benjamin Chang, Ludovico Mitchener, et al.
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