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Algorithms for Molecular Biology : AMB|February 28, 2025
Finding high posterior density phylogenies by systematically extending a directed acyclic graphChris Jennings-Shaffer, David H Rich, Matthew Macaulay, et al.Open Forum Infectious Diseases|July 10, 2023
Passively Acquired Constant Region 5-Specific Antibodies Associated With Improved Survival in Infants Who Acquire Human Immunodeficiency VirusZak A Yaffe, Kevin Sung, Rose Bosire, et al.Arxiv|August 20, 2025
Inference of germinal center evolutionary dynamics via simulation-based deep learningDuncan K Ralph, Athanasios G Bakis, Jared Galloway, et al.Molecular Biology and Evolution|August 12, 2025
A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-EncoderFrederick A Matsen, Kevin Sung, Mackenzie M Johnson, et al.Journal of Shoulder and Elbow Surgery|October 10, 2025
Characterizing glenoid wear after hemiarthroplasty with concentric glenoid reaming: a study of 113 arthroplasties at a mean of 6.7 years of follow-upAndrew P Collins, Mihir M Sheth, James F Stenson, et al.Frontiers in Immunology|November 19, 2019
sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model ValidationBranden J Olson, Pejvak Moghimi, Chaim A Schramm, et al.Elife|April 28, 2026
Inference of germinal center evolutionary dynamics via simulation-based deep learningDuncan K Ralph, Athanasios G Bakis, Jared G Galloway, et al.Proceedings of the National Academy of Sciences of the United States of America|November 28, 2012
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of HaloarchaeaShijulal Nelson-Sathi, Tal Dagan, Giddy Landan, et al.Bioinformatics (Oxford, England)|September 23, 2023
phippery: a software suite for PhIP-Seq data analysisJared G Galloway, Kevin Sung, Samuel S Minot, et al.Journal of Shoulder and Elbow Surgery|April 28, 2009
Charles Neer: on the giant of the shoulderLouis U Bigliani, Robert H Cofield, Evan L Flatow, et al.Pageof 47