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BMC Research Notes|February 13, 2016
AdapterRemoval v2: rapid adapter trimming, identification, and read mergingMikkel Schubert, Stinus Lindgreen, Ludovic OrlandoBMC Genomics|May 12, 2012
Improving ancient DNA read mapping against modern reference genomesMikkel Schubert, Aurelien Ginolhac, Stinus Lindgreen, et al.BMC Research Notes|July 4, 2012
AdapterRemoval: easy cleaning of next-generation sequencing readsStinus LindgreenMethods in Molecular Biology (Clifton, N.J.)|March 16, 2019
Authentication and Assessment of Contamination in Ancient DNAGabriel Renaud, Mikkel Schubert, Susanna Sawyer, et al.Nucleic Acids Research|May 22, 2008
WAR: Webserver for aligning structural RNAsElfar Torarinsson, Stinus LindgreenBioinformatics (Oxford, England)|April 25, 2013
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parametersHákon Jónsson, Aurélien Ginolhac, Mikkel Schubert, et al.Bioinformatics (Oxford, England)|November 17, 2007
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealingStinus Lindgreen, Paul P Gardner, Anders KroghBMC Research Notes|October 9, 2014
SNPest: a probabilistic graphical model for estimating genotypesStinus Lindgreen, Anders Krogh, Jakob Skou PedersenBMC Bioinformatics|April 11, 2014
Adaptable probabilistic mapping of short reads using position specific scoring matricesPeter Kerpedjiev, Jes Frellsen, Stinus Lindgreen, et al.Scientific Reports|April 22, 2020
Author Correction: An evaluation of the accuracy and speed of metagenome analysis toolsStinus Lindgreen, Karen L Adair, Paul P GardnerPageof 23