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Nucleic Acids Research|May 12, 2020
MutaRNA: analysis and visualization of mutation-induced changes in RNA structureMilad Miladi, Martin Raden, Sven Diederichs, et al.Algorithms for Molecular Biology : AMB|December 9, 2020
Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chainsMilad Miladi, Martin Raden, Sebastian Will, et al.Bioinformatics (Oxford, England)|December 28, 2018
Integration of accessibility data from structure probing into RNA-RNA interaction predictionMilad Miladi, Soheila Montaseri, Rolf Backofen, et al.Bioinformatics (Oxford, England)|September 13, 2019
ShaKer: RNA SHAPE prediction using graph kernelStefan Mautner, Soheila Montaseri, Milad Miladi, et al.Nature Communications|June 14, 2019
A pan-cancer analysis of synonymous mutationsYogita Sharma, Milad Miladi, Sandeep Dukare, et al.Methods in Molecular Biology (Clifton, N.J.)|May 23, 2024
How to do RNA-RNA Interaction Prediction? A Use-Case Driven Handbook Using IntaRNAMartin Raden, Milad MiladiRNA Biology|July 9, 2021
Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligandsMartin Raden, Thomas Wallach, Milad Miladi, et al.Bioinformatics (Oxford, England)|April 4, 2015
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristicsSebastian Will, Christina Otto, Milad Miladi, et al.International Journal of Molecular Sciences|June 3, 2020
CopomuS-Ranking Compensatory Mutations to Guide RNA-RNA Interaction Verification ExperimentsMartin Raden, Fabio Gutmann, Michael Uhl, et al.Bioinformatics (Oxford, England)|July 14, 2020
The locality dilemma of Sankoff-like RNA alignmentsTeresa Müller, Milad Miladi, Frank Hutter, et al.Pageof 38