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Biorxiv : the Preprint Server for Biology|November 19, 2025
Edit Distance Embedding with Genomic Large Language ModelXiang Li, Ke Chen, Yijia Zhang, et al.
Biorxiv : the Preprint Server for Biology|December 8, 2025
MELO-ED: learning locality-sensitive multi-embeddings for edit distanceXin Yuan, Ke Chen, Ajmain Yasar Ahmed, et al.
Biorxiv : the Preprint Server for Biology|February 19, 2024
Accurate Assembly of Circular RNAs with TERRACETasfia Zahin, Qian Shi, Xiaofei Carl Zang, et al.
Genome Research|July 26, 2024
Accurate assembly of circular RNAs with TERRACETasfia Zahin, Qian Shi, Xiaofei Carl Zang, et al.
Genome Research|May 29, 2026
Augmenting transcriptome annotations through the lens of splicing evolutionXiaofei Carl Zang, Ke Chen, Irtesam Mahmud Khan, et al.
Biorxiv : the Preprint Server for Biology|November 22, 2024
Augmenting Transcriptome Annotations through the Lens of Splicing EvolutionXiaofei Carl Zang, Ke Chen, Irtesam Mahmud Khan, et al.
Genome Research|May 4, 2026
Hash functions in nucleotide sequence analysisKe Chen, Xiang Li, Qian Shi, et al.
Bioinformatics (Oxford, England)|June 28, 2024
Learning locality-sensitive bucketing functionsXin Yuan, Ke Chen, Xiang Li, et al.
Current Biology : CB|March 30, 2020
Local and Systemic Effects of Brassinosteroid Perception in Developing PhloemMoritz Graeff, Surbhi Rana, Petra Marhava, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Boosting Transcript Assembly via Delineating Transcript Start and End SitesIrtesam Mahmud Khan, Xiaofei Carl Zang, Ange Teng, et al.
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