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Protein Science : a Publication of the Protein Society|June 17, 2008
OPUS-Rota: a fast and accurate method for side-chain modelingMingyang Lu, Athanasios D Dousis, Jianpeng MaJournal of Molecular Biology|January 8, 2008
OPUS-PSP: an orientation-dependent statistical all-atom potential derived from side-chain packingMingyang Lu, Athanasios D Dousis, Jianpeng MaJournal of Molecular Biology|November 26, 2008
OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundariesYinghao Wu, Athanasios D Dousis, Mingzhi Chen, et al.Proceedings of the National Academy of Sciences of the United States of America|October 4, 2008
A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallographyMingyang Lu, Jianpeng MaArchives of Biochemistry and Biophysics|January 8, 2011
Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic modelsMingyang Lu, Jianpeng MaBiophysical Journal|August 2, 2005
The role of shape in determining molecular motionsMingyang Lu, Jianpeng MaJournal of Molecular Biology|January 22, 2013
PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environmentMingyang Lu, Jianpeng MaArchives of Biochemistry and Biophysics|January 13, 2009
Predicting protein folding cores by empirical potential functionsMingzhi Chen, Athanasios D Dousis, Yinghao Wu, et al.The Journal of Physical Chemistry. B|March 28, 2012
fSUB: normal mode analysis with flexible substructuresMingyang Lu, Dengming Ming, Jianpeng MaJournal of Chemical Theory and Computation|September 28, 2011
A New Method for Coarse-Grained Elastic Normal-Mode AnalysisMingyang Lu, Billy Poon, Jianpeng MaPageof 22