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NPJ Systems Biology and Applications|November 13, 2018
Role of noise and parametric variation in the dynamics of gene regulatory circuitsVivek Kohar, Mingyang LuIscience|February 24, 2023
A quantitative evaluation of topological motifs and their coupling in gene circuit state distributionsBenjamin Clauss, Mingyang LuBioinformatics (Oxford, England)|July 18, 2020
OPUS-TASS: a protein backbone torsion angles and secondary structure predictor based on ensemble neural networksGang Xu, Qinghua Wang, Jianpeng MaJournal of Chemical Theory and Computation|January 15, 2020
OPUS-Refine: A Fast Sampling-Based Framework for Refining Protein Backbone Torsion Angles and Global ConformationGang Xu, Qinghua Wang, Jianpeng MaProceedings of the National Academy of Sciences of the United States of America|March 7, 2002
Molecular dynamics analysis of a buckyball-antibody complexWilliam H Noon, Yifei Kong, Jianpeng MaMolecular Systems Biology|February 9, 2026
Dissecting reversible and irreversible single cell state transitions from gene regulatory networksDaniel A Ramirez, Mingyang LuBiorxiv : the Preprint Server for Biology|September 11, 2024
Dissecting reversible and irreversible single cell state transitions from gene regulatory networksDaniel A Ramirez, Mingyang LuCell Systems|August 23, 2025
ProtRNA: A protein-derived RNA language model by cross-modality transfer learningRuoxi Zhang, Ben Ma, Gang Xu, et al.The Journal of Chemical Physics|April 26, 2011
Phase transition of nanotube-confined water driven by electric fieldZhaoming Fu, Yin Luo, Jianpeng Ma, et al.The Journal of Chemical Physics|August 3, 2014
Parallel continuous simulated tempering and its applications in large-scale molecular simulationsTianwu Zang, Linglin Yu, Chong Zhang, et al.Pageof 22