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Nature Methods|November 23, 2023
Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNAMinkyung Baek, Ryan McHugh, Ivan Anishchenko, et al.Nature Methods|March 2, 2010
Atomic accuracy in predicting and designing noncanonical RNA structureRhiju Das, John Karanicolas, David BakerNature Methods|March 29, 2025
Atomic context-conditioned protein sequence design using LigandMPNNJustas Dauparas, Gyu Rie Lee, Robert Pecoraro, et al.Nature Methods|October 1, 2013
Improved low-resolution crystallographic refinement with Phenix and RosettaFrank DiMaio, Nathaniel Echols, Jeffrey J Headd, et al.Nature Methods|August 17, 2010
High-resolution mapping of protein sequence-function relationshipsDouglas M Fowler, Carlos L Araya, Sarel J Fleishman, et al.Nature Methods|February 24, 2015
De novo protein structure determination from near-atomic-resolution cryo-EM mapsRay Yu-Ruei Wang, Mikhail Kudryashev, Xueming Li, et al.Nature Methods|February 24, 2015
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinementFrank DiMaio, Yifan Song, Xueming Li, et al.Nature Methods|December 23, 2015
Engineering an allosteric transcription factor to respond to new ligandsNoah D Taylor, Alexander S Garruss, Rocco Moretti, et al.Nature Methods|December 3, 2025
Atom-level enzyme active site scaffolding using RFdiffusion2Woody Ahern, Jason Yim, Doug Tischer, et al.Nature Methods|June 3, 2020
Macromolecular modeling and design in Rosetta: recent methods and frameworksJulia Koehler Leman, Brian D Weitzner, Steven M Lewis, et al.Pageof 1