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BMC Genomics|January 17, 2009
Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomesMinli Xu, Zhengchang SuPlos One|January 26, 2010
A novel alignment-free method for comparing transcription factor binding site motifsMinli Xu, Zhengchang SuBMC Genomics|October 6, 2010
Computational analysis of LexA regulons in CyanobacteriaShan Li, Minli Xu, Zhengchang SuNucleic Acids Research|April 23, 2009
Genome-wide de novo prediction of cis-regulatory binding sites in prokaryotesShaoqiang Zhang, Minli Xu, Shan Li, et al.BMC Genomics|September 13, 2019
Deciphering epigenomic code for cell differentiation using deep learningPengyu Ni, Zhengchang SuDatabase : the Journal of Biological Databases and Curation|April 22, 2022
PCRMS: a database of predicted cis-regulatory modules and constituent transcription factor binding sites in genomesPengyu Ni, Zhengchang SuDevelopmental Biology|July 23, 2014
Identification of genes driving lineage divergence from single-cell gene expression data in C. elegansChen Xu, Zhengchang SuNAR Genomics and Bioinformatics|June 23, 2021
Accurate prediction of <i>cis</i>-regulatory modules reveals a prevalent regulatory genome of humansPengyu Ni, Zhengchang SuBig Data Analytics|December 14, 2020
PorthoMCL: Parallel orthology prediction using MCL for the realm of massive genome availabilityEhsan Tabari, Zhengchang SuBioinformatics (Oxford, England)|March 26, 2015
Identification of cell types from single-cell transcriptomes using a novel clustering methodChen Xu, Zhengchang SuPageof 8