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Cancer Cell|August 31, 2023
Deep learning transforms colorectal cancer biomarker prediction from histopathology imagesPekka Ruusuvuori, Mira Valkonen, Leena Latonen
IEEE Journal of Biomedical and Health Informatics|November 19, 2020
Generalized Fixation Invariant Nuclei Detection Through Domain Adaptation Based Deep LearningMira Valkonen, Gunilla Hognas, G Steven Bova, et al.
Journal of Pathology Informatics|March 9, 2016
Feature-based analysis of mouse prostatic intraepithelial neoplasia in histological tissue sectionsPekka Ruusuvuori, Mira Valkonen, Matti Nykter, et al.
Patterns (New York, N.Y.)|May 24, 2023
The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibilityUmair Khan, Sonja Koivukoski, Mira Valkonen, et al.
Scientific Reports|March 21, 2017
Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor modelsMira Valkonen, Pekka Ruusuvuori, Kimmo Kartasalo, et al.
Cytometry. Part a : the Journal of the International Society for Analytical Cytology|April 21, 2017
Metastasis detection from whole slide images using local features and random forestsMira Valkonen, Kimmo Kartasalo, Kaisa Liimatainen, et al.
Medical Image Analysis|September 4, 2023
Deformation equivariant cross-modality image synthesis with paired non-aligned training dataJoel Honkamaa, Umair Khan, Sonja Koivukoski, et al.
Heliyon|February 7, 2022
Spatial analysis of histology in 3D: quantification and visualization of organ and tumor level tissue environmentPekka Ruusuvuori, Masi Valkonen, Kimmo Kartasalo, et al.
IEEE Transactions on Medical Imaging|August 10, 2019
Cytokeratin-Supervised Deep Learning for Automatic Recognition of Epithelial Cells in Breast Cancers Stained for ER, PR, and Ki-67Mira Valkonen, Jorma Isola, Onni Ylinen, et al.
Pathology, Research and Practice|July 3, 2025
Digitalization of pathology in a multicenter setup: A user experience study and comparison of two alternative implementation strategiesAnna Välimäki, Teppo Haapaniemi, Mira Valkonen, et al.
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