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Biochimica Et Biophysica Acta. General Subjects
|
November 6, 2020
Residues flanking the ARK<sup>me3</sup>T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations
Pavlína Pokorná, Miroslav Krepl, Jiří Šponer
Journal of Chemical Information and Modeling
|
January 13, 2025
How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study
Toon Lemmens, Jiří Šponer, Miroslav Krepl
The Journal of Physical Chemistry. B
|
January 29, 2013
Effect of guanine to inosine substitution on stability of canonical DNA and RNA duplexes: molecular dynamics thermodynamics integration study
Miroslav Krepl, Michal Otyepka, Pavel Banáš, et al.
The Journal of Physical Chemistry. B
|
March 29, 2013
Bioinformatics and molecular dynamics simulation study of L1 stalk non-canonical rRNA elements: kink-turns, loops, and tetraloops
Miroslav Krepl, Kamila Réblová, Jaroslav Koča, et al.
Journal of Chemical Theory and Computation
|
September 11, 2018
QM/MM Calculations on Protein-RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods
Pavlína Pokorná, Holger Kruse, Miroslav Krepl, et al.
Journal of Chemical Theory and Computation
|
September 3, 2019
Role of Fine Structural Dynamics in Recognition of Histone H3 by HP1γ(CSD) Dimer and Ability of Force Fields to Describe Their Interaction Network
Pavlína Pokorná, Miroslav Krepl, Eva Bártová, et al.
The Journal of Physical Chemistry. B
|
September 6, 2024
Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy Prediction
Valerio Piomponi, Miroslav Krepl, Jiri Sponer, et al.
Journal of Chemical Theory and Computation
|
October 17, 2017
MD and QM/MM Study of the Quaternary HutP Homohexamer Complex with mRNA, l-Histidine Ligand, and Mg<sup>2</sup>
Pavlína Pokorná, Miroslav Krepl, Holger Kruse, et al.
The Journal of Physical Chemistry. B
|
November 9, 2022
Conformational Heterogeneity of RNA Stem-Loop Hairpins Bound to FUS-RNA Recognition Motif with Disordered RGG Tail Revealed by Unbiased Molecular Dynamics Simulations
Pavlína Pokorná, Miroslav Krepl, Sébastien Campagne, et al.
Journal of Chemical Information and Modeling
|
July 17, 2023
Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations
Petr Stadlbauer, Vojtěch Mlýnský, Miroslav Krepl, et al.
Page
of 6
Search research articles
Search
Showing results (1-10 of 55) with videos related to
Sort By:
Page
of 6
Biochimica Et Biophysica Acta. General Subjects
|
November 6, 2020
Residues flanking the ARK<sup>me3</sup>T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations
Pavlína Pokorná, Miroslav Krepl, Jiří Šponer
Journal of Chemical Information and Modeling
|
January 13, 2025
How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study
Toon Lemmens, Jiří Šponer, Miroslav Krepl
The Journal of Physical Chemistry. B
|
January 29, 2013
Effect of guanine to inosine substitution on stability of canonical DNA and RNA duplexes: molecular dynamics thermodynamics integration study
Miroslav Krepl, Michal Otyepka, Pavel Banáš, et al.
The Journal of Physical Chemistry. B
|
March 29, 2013
Bioinformatics and molecular dynamics simulation study of L1 stalk non-canonical rRNA elements: kink-turns, loops, and tetraloops
Miroslav Krepl, Kamila Réblová, Jaroslav Koča, et al.
Journal of Chemical Theory and Computation
|
September 11, 2018
QM/MM Calculations on Protein-RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods
Pavlína Pokorná, Holger Kruse, Miroslav Krepl, et al.
Journal of Chemical Theory and Computation
|
September 3, 2019
Role of Fine Structural Dynamics in Recognition of Histone H3 by HP1γ(CSD) Dimer and Ability of Force Fields to Describe Their Interaction Network
Pavlína Pokorná, Miroslav Krepl, Eva Bártová, et al.
The Journal of Physical Chemistry. B
|
September 6, 2024
Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy Prediction
Valerio Piomponi, Miroslav Krepl, Jiri Sponer, et al.
Journal of Chemical Theory and Computation
|
October 17, 2017
MD and QM/MM Study of the Quaternary HutP Homohexamer Complex with mRNA, l-Histidine Ligand, and Mg<sup>2</sup>
Pavlína Pokorná, Miroslav Krepl, Holger Kruse, et al.
The Journal of Physical Chemistry. B
|
November 9, 2022
Conformational Heterogeneity of RNA Stem-Loop Hairpins Bound to FUS-RNA Recognition Motif with Disordered RGG Tail Revealed by Unbiased Molecular Dynamics Simulations
Pavlína Pokorná, Miroslav Krepl, Sébastien Campagne, et al.
Journal of Chemical Information and Modeling
|
July 17, 2023
Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations
Petr Stadlbauer, Vojtěch Mlýnský, Miroslav Krepl, et al.
Page
of 6