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Miroslav Krepl

Showing results (21-30 of 55) with videos related to

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Journal of Chemical Theory and Computation|February 10, 2026
Destabilization of Structured RNAs by OPC and TIP4PD Water ModelsMiroslav Krepl, Vojtěch Mlýnský, Agnesa Rusnáková, et al.
Nucleic Acids Research|June 13, 2018
An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitchMiroslav Krepl, Jennifer Vögele, Holger Kruse, et al.
Nature Communications|September 12, 2019
RuvC uses dynamic probing of the Holliday junction to achieve sequence specificity and efficient resolutionKarolina Maria Górecka, Miroslav Krepl, Aleksandra Szlachcic, et al.
The Journal of Physical Chemistry. B|November 10, 2015
Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force FieldsMarek Havrila, Marie Zgarbová, Petr Jurečka, et al.
Journal of Chemical Theory and Computation|November 9, 2023
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA SimulationsVojtěch Mlýnský, Petra Kührová, Petr Stadlbauer, et al.
Nucleic Acids Research|August 7, 2015
Extended molecular dynamics of a c-kit promoter quadruplexBarira Islam, Petr Stadlbauer, Miroslav Krepl, et al.
Journal of Chemical Theory and Computation|December 8, 2025
The Kink-Turn 7 Motif: An Additional Test for RNA Force Field PerformanceToon Lemmens, Vojtěch Mlýnský, Jiří Šponer, et al.
Journal of Chemical Theory and Computation|July 16, 2024
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid DuplexesBarbora Knappeová, Vojtěch Mlýnský, Martin Pykal, et al.
Nucleic Acids Research|May 16, 2017
Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognitionMiroslav Krepl, Markus Blatter, Antoine Cléry, et al.
RNA (New York, N.Y.)|March 3, 2023
Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNAJennifer Vögele, Elke Duchardt-Ferner, Holger Kruse, et al.
Pageof 6

Showing results (21-30 of 55) with videos related to

Sort By:
Pageof 6
Journal of Chemical Theory and Computation|February 10, 2026
Destabilization of Structured RNAs by OPC and TIP4PD Water ModelsMiroslav Krepl, Vojtěch Mlýnský, Agnesa Rusnáková, et al.
Nucleic Acids Research|June 13, 2018
An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitchMiroslav Krepl, Jennifer Vögele, Holger Kruse, et al.
Nature Communications|September 12, 2019
RuvC uses dynamic probing of the Holliday junction to achieve sequence specificity and efficient resolutionKarolina Maria Górecka, Miroslav Krepl, Aleksandra Szlachcic, et al.
The Journal of Physical Chemistry. B|November 10, 2015
Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force FieldsMarek Havrila, Marie Zgarbová, Petr Jurečka, et al.
Journal of Chemical Theory and Computation|November 9, 2023
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA SimulationsVojtěch Mlýnský, Petra Kührová, Petr Stadlbauer, et al.
Nucleic Acids Research|August 7, 2015
Extended molecular dynamics of a c-kit promoter quadruplexBarira Islam, Petr Stadlbauer, Miroslav Krepl, et al.
Journal of Chemical Theory and Computation|December 8, 2025
The Kink-Turn 7 Motif: An Additional Test for RNA Force Field PerformanceToon Lemmens, Vojtěch Mlýnský, Jiří Šponer, et al.
Journal of Chemical Theory and Computation|July 16, 2024
Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid DuplexesBarbora Knappeová, Vojtěch Mlýnský, Martin Pykal, et al.
Nucleic Acids Research|May 16, 2017
Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognitionMiroslav Krepl, Markus Blatter, Antoine Cléry, et al.
RNA (New York, N.Y.)|March 3, 2023
Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNAJennifer Vögele, Elke Duchardt-Ferner, Holger Kruse, et al.
Pageof 6