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Journal of Chemical Theory and Computation
|
June 14, 2022
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field
Thorben Fröhlking, Vojtěch Mlýnský, Michal Janeček, et al.
The Journal of Physical Chemistry. B
|
January 20, 2021
Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments
Zhengyue Zhang, Jennifer Vögele, Klaudia Mráziková, et al.
Cells
|
September 20, 2019
DNA Damage Changes Distribution Pattern and Levels of HP1 Protein Isoforms in the Nucleolus and Increases Phosphorylation of HP1β-Ser88
Soňa Legartová, Gabriela Lochmanová, Zbyněk Zdráhal, et al.
Wiley Interdisciplinary Reviews. RNA
|
November 19, 2016
How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?
Jiří Šponer, Miroslav Krepl, Pavel Banáš, et al.
Journal of Chemical Theory and Computation
|
January 15, 2025
Can We Ever Develop an Ideal RNA Force Field? Lessons Learned from Simulations of the UUCG RNA Tetraloop and Other Systems
Vojtěch Mlýnský, Petra Kührová, Martin Pykal, et al.
Journal of Chemical Information and Modeling
|
May 1, 2023
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations
Zhengyue Zhang, Jiří Šponer, Giovanni Bussi, et al.
The Journal of Physical Chemistry. B
|
July 14, 2021
Recognition of N6-Methyladenosine by the YTHDC1 YTH Domain Studied by Molecular Dynamics and NMR Spectroscopy: The Role of Hydration
Miroslav Krepl, Fred Franz Damberger, Christine von Schroetter, et al.
The Journal of Biological Chemistry
|
November 11, 2017
Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase
Małgorzata Figiel, Miroslav Krepl, Sangwoo Park, et al.
The Journal of Physical Chemistry Letters
|
August 14, 2015
Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome
Jiří Šponer, Pavel Banáš, Petr Jurečka, et al.
Journal of Chemical Theory and Computation
|
December 1, 2012
Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA and Z-DNA
Miroslav Krepl, Marie Zgarbová, Petr Stadlbauer, et al.
Page
of 6
Search research articles
Search
Showing results (31-40 of 55) with videos related to
Sort By:
Page
of 6
Journal of Chemical Theory and Computation
|
June 14, 2022
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field
Thorben Fröhlking, Vojtěch Mlýnský, Michal Janeček, et al.
The Journal of Physical Chemistry. B
|
January 20, 2021
Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments
Zhengyue Zhang, Jennifer Vögele, Klaudia Mráziková, et al.
Cells
|
September 20, 2019
DNA Damage Changes Distribution Pattern and Levels of HP1 Protein Isoforms in the Nucleolus and Increases Phosphorylation of HP1β-Ser88
Soňa Legartová, Gabriela Lochmanová, Zbyněk Zdráhal, et al.
Wiley Interdisciplinary Reviews. RNA
|
November 19, 2016
How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?
Jiří Šponer, Miroslav Krepl, Pavel Banáš, et al.
Journal of Chemical Theory and Computation
|
January 15, 2025
Can We Ever Develop an Ideal RNA Force Field? Lessons Learned from Simulations of the UUCG RNA Tetraloop and Other Systems
Vojtěch Mlýnský, Petra Kührová, Martin Pykal, et al.
Journal of Chemical Information and Modeling
|
May 1, 2023
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations
Zhengyue Zhang, Jiří Šponer, Giovanni Bussi, et al.
The Journal of Physical Chemistry. B
|
July 14, 2021
Recognition of N6-Methyladenosine by the YTHDC1 YTH Domain Studied by Molecular Dynamics and NMR Spectroscopy: The Role of Hydration
Miroslav Krepl, Fred Franz Damberger, Christine von Schroetter, et al.
The Journal of Biological Chemistry
|
November 11, 2017
Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase
Małgorzata Figiel, Miroslav Krepl, Sangwoo Park, et al.
The Journal of Physical Chemistry Letters
|
August 14, 2015
Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome
Jiří Šponer, Pavel Banáš, Petr Jurečka, et al.
Journal of Chemical Theory and Computation
|
December 1, 2012
Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA and Z-DNA
Miroslav Krepl, Marie Zgarbová, Petr Stadlbauer, et al.
Page
of 6