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Journal of Chemical Theory and Computation|June 9, 2020
Parallel Implementation of Density Functional Theory Methods in the Quantum Interaction Computational Kernel ProgramMadushanka Manathunga, Yipu Miao, Dawei Mu, et al.Journal of Chemical Information and Modeling|April 29, 2021
Open-Source Multi-GPU-Accelerated QM/MM Simulations with AMBER and QUICKVinícius Wilian D Cruzeiro, Madushanka Manathunga, Kenneth M Merz, et al.Journal of the American Chemical Society|April 3, 2018
The Role of the Active Site Flap in Streptavidin/Biotin Complex FormationNupur Bansal, Zheng Zheng, Lin Frank Song, et al.The Journal of Chemical Physics|September 8, 2011
Pairwise additivity of energy components in protein-ligand binding: the HIV II protease-Indinavir caseMelek N Ucisik, Danial S Dashti, John C Faver, et al.Journal of Chemical Theory and Computation|December 8, 2015
Accurate Atomic and Molecular Calculations without Gradient Corrections: Scaled SVWNV Density FunctionalKevin E Riley, Edward N Brothers, Kenneth B Ayers, et al.Journal of Chemical Information and Modeling|February 4, 2021
Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water ModelsArkajyoti Sengupta, Zhen Li, Lin Frank Song, et al.Journal of Chemical Theory and Computation|May 20, 2014
Molecular Dynamics Study of Helicobacter pylori UreaseMona S Minkara, Melek N Ucisik, Michael N Weaver, et al.Journal of Chemical Information and Modeling|March 6, 2026
QUICK and Robust ESP and RESP Charges for Computational Biochemistry: Open-Source GPU ImplementationVikrant Tripathy, Etienne Palos, Kenneth M Merz, et al.Protein Science : a Publication of the Protein Society|November 30, 2006
Critical assessment of quantum mechanics based energy restraints in protein crystal structure refinementNing Yu, Xue Li, Guanglei Cui, et al.Journal of Chemical Theory and Computation|December 30, 2022
Accurate Metal-Imidazole InteractionsZhen Li, Lin Frank Song, Gaurav Sharma, et al.Pageof 23