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The Journal of Chemical Physics|April 5, 2011
Coherent vibrational energy transfer along a peptide helixMaja Kobus, Phuong H Nguyen, Gerhard StockThe Journal of Physical Chemistry. B|July 1, 2015
In Search of an Efficient Photoswitch for Functional RNA: Design Principles from a Microscopic Analysis of Azobenzene-linker-RNA Dynamics with Different LinkersPadmabati Mondal, Mithun Biswas, Thomas Goldau, et al.Proteins|November 3, 2004
Energy landscape of a small peptide revealed by dihedral angle principal component analysisYuguang Mu, Phuong H Nguyen, Gerhard StockThe Journal of Physical Chemistry. B|December 24, 2009
Free-energy landscape of RNA hairpins constructed via dihedral angle principal component analysisLaura Riccardi, Phuong H Nguyen, Gerhard StockProteins|June 25, 2005
Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics studyPhuong H Nguyen, Yuguang Mu, Gerhard StockJournal of Chemical Theory and Computation|November 25, 2015
Construction of the Free Energy Landscape of Peptide Aggregation from Molecular Dynamics SimulationsLaura Riccardi, Phuong H Nguyen, Gerhard StockThe Journal of Physical Chemistry Letters|April 10, 2018
Machine Learning of Biomolecular Reaction CoordinatesSimon Brandt, Florian Sittel, Matthias Ernst, et al.The Journal of Chemical Physics|November 18, 2009
Molecular dynamics simulation of cooling: heat transfer from a photoexcited peptide to the solventSang-Min Park, Phuong H Nguyen, Gerhard StockJournal of Chemical Theory and Computation|March 17, 2018
MELD-Path Efficiently Computes Conformational Transitions, Including Multiple and Diverse PathsAlberto Perez, Florian Sittel, Gerhard Stock, et al.The Journal of Chemical Physics|June 25, 2005
Ab initio-based exciton model of amide I vibrations in peptides: definition, conformational dependence, and transferabilityRoman D Gorbunov, Daniil S Kosov, Gerhard StockPageof 12