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December 21, 2006
Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state
Mitsugu Araki, Atsuo Tamura
The FEBS Journal
|
March 19, 2009
Solubility-dependent structural formation of a 25-residue, natively unfolded protein, induced by addition of a seven-residue peptide fragment
Mitsugu Araki, Atsuo Tamura
Scientific Reports
|
November 14, 2019
Calculation of absolute binding free energies between the hERG channel and structurally diverse drugs
Tatsuki Negami, Mitsugu Araki, Yasushi Okuno, et al.
Bioinformatics (Oxford, England)
|
October 18, 2017
Machine learning accelerates MD-based binding pose prediction between ligands and proteins
Kei Terayama, Hiroaki Iwata, Mitsugu Araki, et al.
Journal of Chemical Information and Modeling
|
September 22, 2021
Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Computational Chemistry
|
April 9, 2020
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Communications Biology
|
March 30, 2023
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
The Journal of Physical Chemistry. B
|
February 28, 2019
Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Chemical Information and Modeling
|
May 16, 2024
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, et al.
Journal of Chemical Information and Modeling
|
December 28, 2016
The Effect of Conformational Flexibility on Binding Free Energy Estimation between Kinases and Their Inhibitors
Mitsugu Araki, Narutoshi Kamiya, Miwa Sato, et al.
Page
of 6
Search research articles
Search
Showing results (1-10 of 51) with videos related to
Sort By:
Page
of 6
Proteins
|
December 21, 2006
Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state
Mitsugu Araki, Atsuo Tamura
The FEBS Journal
|
March 19, 2009
Solubility-dependent structural formation of a 25-residue, natively unfolded protein, induced by addition of a seven-residue peptide fragment
Mitsugu Araki, Atsuo Tamura
Scientific Reports
|
November 14, 2019
Calculation of absolute binding free energies between the hERG channel and structurally diverse drugs
Tatsuki Negami, Mitsugu Araki, Yasushi Okuno, et al.
Bioinformatics (Oxford, England)
|
October 18, 2017
Machine learning accelerates MD-based binding pose prediction between ligands and proteins
Kei Terayama, Hiroaki Iwata, Mitsugu Araki, et al.
Journal of Chemical Information and Modeling
|
September 22, 2021
Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Computational Chemistry
|
April 9, 2020
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Communications Biology
|
March 30, 2023
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
The Journal of Physical Chemistry. B
|
February 28, 2019
Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, et al.
Journal of Chemical Information and Modeling
|
May 16, 2024
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, et al.
Journal of Chemical Information and Modeling
|
December 28, 2016
The Effect of Conformational Flexibility on Binding Free Energy Estimation between Kinases and Their Inhibitors
Mitsugu Araki, Narutoshi Kamiya, Miwa Sato, et al.
Page
of 6