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Briefings in Bioinformatics|January 2, 2022
BML: a versatile web server for bipartite motif discoveryMohammad Vahed, Majid Vahed, Lana X Garmire
Plos One|August 31, 2019
DIpartite: A tool for detecting bipartite motifs by considering base interdependenciesMohammad Vahed, Jun-Ichi Ishihara, Hiroki Takahashi
Computational Biology and Chemistry|October 5, 2019
The initial stage of structural transformation of Aβ42 peptides from the human and mole rat in the presence of Fe2+ and Fe3+: Related to Alzheimer's diseaseMohammad Vahed, Aaron Sweeney, Hiroshi Shirasawa, et al.
Computational Biology and Chemistry|April 10, 2019
G-rich VEGF aptamer as a potential inhibitor of chitin trafficking signal in emerging opportunistic yeast infectionMohammad Vahed, Gholamreza Ahmadian, Niyoosha Ameri, et al.
Softwarex|March 27, 2023
T-Ridership: A web tool for reprogramming public transportation fleets to minimize COVID-19 transmissionSaba Imani, Majid Vahed, Shreya Satodia, et al.
Frontiers in Immunology|December 1, 2022
pyTCR: A comprehensive and scalable solution for TCR-Seq data analysis to facilitate reproducibility and rigor of immunogenomics researchKerui Peng, Jaden Moore, Mohammad Vahed, et al.
Peerj. Computer Science|July 10, 2024
Analytical code sharing practices in biomedical researchNitesh Kumar Sharma, Ram Ayyala, Dhrithi Deshpande, et al.
Biorxiv : the Preprint Server for Biology|August 23, 2023
Analytical code sharing practices in biomedical researchNitesh Kumar Sharma, Ram Ayyala, Dhrithi Deshpande, et al.
Briefings in Bioinformatics|June 9, 2023
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencingKerui Peng, Theodore S Nowicki, Katie Campbell, et al.
American Journal of Pharmaceutical Education|December 14, 2024
Pioneering Computational Culture Within Pharmacy Schools by Empowering Students With Data Science and Bioinformatics SkillsCynthia Ronkowski, Dhrithi Deshpande, Nitesh Sharma, et al.
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