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IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 19, 2024
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference GenomesJeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.Frontiers in Genetics|November 12, 2024
TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filteringMeryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, et al.BMC Genomics|May 17, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologiesJeremie S Kim, Damla Senol Cali, Hongyi Xin, et al.NAR Genomics and Bioinformatics|January 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysisCan Firtina, Jisung Park, Mohammed Alser, et al.Diagnostics (Basel, Switzerland)|August 14, 2025
Detection of Dental Anomalies in Digital Panoramic Images Using YOLO: A Next Generation Approach Based on Single Stage Detection ModelsUğur Şevik, Onur MutluBioengineering (Basel, Switzerland)|February 27, 2026
A Parametric Finite Element Analysis of Chick Embryo Aortic Valve Leaflet BiomechanicsOnur Mutlu, Sandra RugonyiDiagnostics (Basel, Switzerland)|November 13, 2025
Automated Multi-Class Classification of Retinal Pathologies: A Deep Learning Approach to Unified Ophthalmic ScreeningUğur Şevik, Onur MutluPlos One|March 18, 2026
ABC-YOLO: Automated skin burn depth classification using YOLO architecturesUğur Şevik, Onur MutluOral Radiology|November 10, 2024
Fractal dimension, lacunarity, and bone area fraction analysis of peri-implant trabecular bone after prosthodontic loadingNesrin Dundar, Elif Aslan, Onur MutluThe International Journal of Oral & Maxillofacial Implants|October 3, 2025
Quantitative Assessment of Long-Term Changes in Peri-Implant Bone Structure in Patients Using Fixed and Removable ProsthesesElif Aslan, Nesrin Dundar, Onur MutluPageof 10