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Computational and Structural Biotechnology Journal
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September 12, 2022
From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
Mohammed Alser, Joel Lindegger, Can Firtina, et al.
Bioinformatics (Oxford, England)
|
March 14, 2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
Can Firtina, Jeremie S Kim, Mohammed Alser, et al.
Genome Biology
|
February 16, 2024
RUBICON: a framework for designing efficient deep learning-based genomic basecallers
Gagandeep Singh, Mohammed Alser, Kristof Denolf, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
|
August 19, 2024
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes
Jeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
Frontiers in Genetics
|
November 12, 2024
TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, et al.
BMC Genomics
|
May 17, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
Jeremie S Kim, Damla Senol Cali, Hongyi Xin, et al.
NAR Genomics and Bioinformatics
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January 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis
Can Firtina, Jisung Park, Mohammed Alser, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
May 13, 2026
<i>Special Issue:</i> 13th International Conference on Computational Advances in Bio and Medical Sciences
Mohammed Alser, Mukul S Bansal, Yury Khudyakov, et al.
Genome Biology
|
August 27, 2021
Technology dictates algorithms: recent developments in read alignment
Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, et al.
Biorxiv : the Preprint Server for Biology
|
September 18, 2025
Robust software development practices improve citations of RNA-seq tools
Sanskruti Sharma, Ecem Ilgun, Tuna Okcu, et al.
Page
of 6
Search research articles
Search
Showing results (11-20 of 51) with videos related to
Sort By:
Page
of 6
Computational and Structural Biotechnology Journal
|
September 12, 2022
From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
Mohammed Alser, Joel Lindegger, Can Firtina, et al.
Bioinformatics (Oxford, England)
|
March 14, 2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
Can Firtina, Jeremie S Kim, Mohammed Alser, et al.
Genome Biology
|
February 16, 2024
RUBICON: a framework for designing efficient deep learning-based genomic basecallers
Gagandeep Singh, Mohammed Alser, Kristof Denolf, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
|
August 19, 2024
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes
Jeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
Frontiers in Genetics
|
November 12, 2024
TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, et al.
BMC Genomics
|
May 17, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
Jeremie S Kim, Damla Senol Cali, Hongyi Xin, et al.
NAR Genomics and Bioinformatics
|
January 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis
Can Firtina, Jisung Park, Mohammed Alser, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|
May 13, 2026
<i>Special Issue:</i> 13th International Conference on Computational Advances in Bio and Medical Sciences
Mohammed Alser, Mukul S Bansal, Yury Khudyakov, et al.
Genome Biology
|
August 27, 2021
Technology dictates algorithms: recent developments in read alignment
Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, et al.
Biorxiv : the Preprint Server for Biology
|
September 18, 2025
Robust software development practices improve citations of RNA-seq tools
Sanskruti Sharma, Ecem Ilgun, Tuna Okcu, et al.
Page
of 6