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Methods in Molecular Biology (Clifton, N.J.)|October 2, 2015
Prediction of Antibody EpitopesMorten Nielsen, Paolo Marcatili
Molecular Immunology|December 31, 2017
Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoringEsteban Lanzarotti, Paolo Marcatili, Morten Nielsen
Frontiers in Immunology|September 27, 2019
T-Cell Receptor Cognate Target Prediction Based on Paired α and β Chain Sequence and Structural CDR Loop SimilaritiesEsteban Lanzarotti, Paolo Marcatili, Morten Nielsen
Nucleic Acids Research|May 5, 2017
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopesMartin Closter Jespersen, Bjoern Peters, Morten Nielsen, et al.
Frontiers in Immunology|March 14, 2019
Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein ComplexesMartin Closter Jespersen, Swapnil Mahajan, Bjoern Peters, et al.
Journal of Immunology (Baltimore, Md. : 1950)|October 6, 2017
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity DataVanessa Jurtz, Sinu Paul, Massimo Andreatta, et al.
Nucleic Acids Research|May 27, 2015
LYRA, a webserver for lymphocyte receptor structural modelingMichael Schantz Klausen, Mads Valdemar Anderson, Martin Closter Jespersen, et al.
Plos One|January 18, 2017
ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope MappingChristian Skjødt Hansen, Thomas Østerbye, Paolo Marcatili, et al.
Protein Science : a Publication of the Protein Society|November 11, 2022
BepiPred-3.0: Improved B-cell epitope prediction using protein language modelsJoakim Nøddeskov Clifford, Magnus Haraldson Høie, Sebastian Deleuran, et al.
Frontiers in Immunology|February 23, 2024
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representationsMagnus Haraldson Høie, Frederik Steensgaard Gade, Julie Maria Johansen, et al.
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