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Systematic Biology|August 1, 2019
Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree ReconstructionMotomu Matsui, Wataru IwasakiMethods in Molecular Biology (Clifton, N.J.)|September 9, 2022
Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) ModelTakao K Suzuki, Motomu Matsui, Sira Sriswasdi, et al.Iscience|September 6, 2021
Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotesNanako Kanno, Shingo Kato, Moriya Ohkuma, et al.STAR Protocols|November 17, 2022
Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithmNanako Kanno, Shingo Kato, Moriya Ohkuma, et al.Msystems|April 3, 2026
Genomic and evolutionary factors influencing the prediction accuracy of optimal growth temperature in prokaryotesSeiji Toki, Motomu Matsui, Kento Tominaga, et al.Scientific Reports|April 30, 2024
Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term managementSusumu Morigasaki, Motomu Matsui, Iwao Ohtsu, et al.Genome Biology and Evolution|January 15, 2013
Comprehensive computational analysis of bacterial CRP/FNR superfamily and its target motifs reveals stepwise evolution of transcriptional networksMotomu Matsui, Masaru Tomita, Akio KanaiBioinformatics Advances|January 26, 2023
Mirage: estimation of ancestral gene-copy numbers by considering different evolutionary patterns among gene familiesTsukasa Fukunaga, Wataru IwasakiBioinformatics (Oxford, England)|January 21, 2022
Inverse Potts model improves accuracy of phylogenetic profilingTsukasa Fukunaga, Wataru IwasakiPlos One|May 2, 2020
Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics dataTsukasa Fukunaga, Wataru IwasakiPageof 15