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Systematic Biology|August 1, 2019
Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree ReconstructionMotomu Matsui, Wataru Iwasaki
Genome Biology and Evolution|January 15, 2013
Comprehensive computational analysis of bacterial CRP/FNR superfamily and its target motifs reveals stepwise evolution of transcriptional networksMotomu Matsui, Masaru Tomita, Akio Kanai
Methods in Molecular Biology (Clifton, N.J.)|September 9, 2022
Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) ModelTakao K Suzuki, Motomu Matsui, Sira Sriswasdi, et al.
FEBS Letters|August 19, 2007
Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouseMotomu Matsui, Nozomu Yachie, Yuki Okada, et al.
Iscience|September 6, 2021
Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotesNanako Kanno, Shingo Kato, Moriya Ohkuma, et al.
STAR Protocols|November 17, 2022
Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithmNanako Kanno, Shingo Kato, Moriya Ohkuma, et al.
Msystems|April 3, 2026
Genomic and evolutionary factors influencing the prediction accuracy of optimal growth temperature in prokaryotesSeiji Toki, Motomu Matsui, Kento Tominaga, et al.
In Silico Biology|February 6, 2007
SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome levelJunichi Sugahara, Nozomu Yachie, Yasuhiko Sekine, et al.
Genomics, Proteomics & Bioinformatics|February 21, 2006
A comprehensive software suite for the analysis of cDNAsKazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, et al.
BMC Genomics|August 26, 2011
Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coliAtsuko Shinhara, Motomu Matsui, Kiriko Hiraoka, et al.
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