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Heliyon|February 3, 2025
RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language modelsMuhammad Nabeel Asim, Muhammad Ali Ibrahim, Tayyaba Asif, et al.
Database : the Journal of Biological Databases and Curation|May 31, 2025
Protein Sequence Analysis landscape: A Systematic Review of Task Types, Databases, Datasets, Word Embeddings Methods, and Language ModelsMuhammad Nabeel Asim, Tayyaba Asif, Faiza Hassan, et al.
Computers in Biology and Medicine|February 23, 2025
Peptide classification landscape: An in-depth systematic literature review on peptide types, databases, datasets, predictors architectures and performanceMuhammad Nabeel Asim, Tayyaba Asif, Faiza Mehmood, et al.
Heliyon|September 16, 2024
ProSol-multi: Protein solubility prediction via amino acids multi-level correlation and discriminative distributionHina Ghafoor, Muhammad Nabeel Asim, Muhammad Ali Ibrahim, et al.
Frontiers in Medicine|April 23, 2025
DNA sequence analysis landscape: a comprehensive review of DNA sequence analysis task types, databases, datasets, word embedding methods, and language modelsMuhammad Nabeel Asim, Muhammad Ali Ibrahim, Arooj Zaib, et al.
Briefings in Bioinformatics|December 18, 2022
DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding methodMuhammad Nabeel Asim, Muhammad Ali Ibrahim, Ahtisham Fazeel, et al.
Frontiers in Medicine|December 5, 2022
MP-VHPPI: Meta predictor for viral host protein-protein interaction prediction in multiple hosts and virusesMuhammad Nabeel Asim, Ahtisham Fazeel, Muhammad Ali Ibrahim, et al.
Computers in Biology and Medicine|May 17, 2024
CAPTURE: Comprehensive anti-cancer peptide predictor with a unique amino acid sequence encoderHina Ghafoor, Muhammad Nabeel Asim, Muhammad Ali Ibrahim, et al.
International Journal of Molecular Sciences|August 27, 2021
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAsMuhammad Nabeel Asim, Muhammad Ali Ibrahim, Muhammad Imran Malik, et al.
Plos One|July 5, 2022
LGCA-VHPPI: A local-global residue context aware viral-host protein-protein interaction predictorMuhammad Nabeel Asim, Muhammad Ali Ibrahim, Muhammad Imran Malik, et al.
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