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Plos One|January 21, 2017
Upon Accounting for the Impact of Isoenzyme Loss, Gene Deletion Costs Anticorrelate with Their Evolutionary RatesChristopher Jacobs, Luke Lambourne, Yu Xia, et al.Proceedings. Biological Sciences|August 17, 2012
Epistasis from functional dependence of fitness on underlying traitsHsuan-Chao Chiu, Christopher J Marx, Daniel SegrèNature Communications|April 23, 2021
Non-additive microbial community responses to environmental complexityAlan R Pacheco, Melisa L Osborne, Daniel SegrèJournal of the Royal Society, Interface|February 3, 2026
Dynamic metabolic modelling of ATP allocation during viral infectionAlvin Lu, Liam Kelley, Ilija Dukovski, et al.Chaos (Woodbury, N.Y.)|January 5, 2011
Modeling the complex dynamics of enzyme-pathway coevolutionMoritz Schütte, Alexander Skupin, Daniel Segrè, et al.Bioinformatics (Oxford, England)|October 22, 2011
A system-level approach for deciphering the transcriptional response to prion infectionMattia Zampieri, Giuseppe Legname, Daniel Segrè, et al.Biorxiv : the Preprint Server for Biology|December 19, 2025
hypeR-GEM: connecting metabolite signatures to enzyme-coding genes via genome-scale metabolic modelsZiwei Huang, Paola Sebastiani, Daniel Segrè, et al.Genome Informatics. International Conference on Genome Informatics|March 19, 2010
Co-evolution of metabolism and protein sequencesMoritz Schütte, Niels Klitgord, Daniel Segrè, et al.Elife|June 14, 2019
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiomeDavid B Bernstein, Floyd E Dewhirst, Daniel SegrèMicrobiology Resource Announcements|February 13, 2019
The Foliar Endophyte <i>Phialocephala scopiformis</i> DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon SourceJennifer M Bhatnagar, Grzegorz Sabat, Daniel CullenPageof 16