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Computational Biology and Chemistry|November 27, 2024
Vector embeddings by sequence similarity and context for improved compression, similarity search, clustering, organization, and manipulation of cDNA librariesDaniel H Um, David A Knowles, Gail E Kaiser
Biorxiv : the Preprint Server for Biology|February 27, 2026
CLADES - Contrastive Learning Augmented DifferEntial Splicing with Orthologous Positive PairsArghamitra Talukder, Nicholas Keung, Itsik Pe'er, et al.
Bioinformatics (Oxford, England)|February 16, 2023
LDmat: efficiently queryable compression of linkage disequilibrium matricesRockwell J Weiner, Chirag Lakhani, David A Knowles, et al.
Plos Genetics|January 19, 2023
Using epigenomics to understand cellular responses to environmental influences in diseasesJulia J Wattacheril, Srilakshmi Raj, David A Knowles, et al.
Biorxiv : the Preprint Server for Biology|October 31, 2023
Large-scale causal discovery using interventional data sheds light on the regulatory network architecture of blood traitsBrielin C Brown, John A Morris, Tuuli Lappalainen, et al.
Biorxiv : the Preprint Server for Biology|May 18, 2026
Multi-sample, multi-platform isoform quantification using empirical BayesArghamitra Talukder, Shree Thavarekere, Madison Mehlferber, et al.
Genetics|September 29, 2025
Inferring fungal cis-regulatory networks from genome sequences via unsupervised and interpretable representation learningAlan M Moses, Jason E Stajich, Audrey P Gasch, et al.
Medrxiv : the Preprint Server for Health Sciences|July 3, 2026
An empirical Bayes framework for burden and dispersion association tests helps prioritize rare variants associated with Alzheimer's diseaseAnjali Das, Chirag Lakhani, Vera M Mazeeva, et al.
Medrxiv : the Preprint Server for Health Sciences|May 5, 2025
CONVEX APPROACHES TO ISOLATE THE SHARED AND DISTINCT GENETIC STRUCTURES OF SUBPHENOTYPES IN HETEROGENEOUS COMPLEX TRAITSSaikat Banerjee, Shane O'Connell, Sarah M C Colbert, et al.
Nature Communications|November 1, 2025
Large-scale causal discovery using interventional data sheds light on gene network structure in k562 cellsBrielin C Brown, Alex Tokolyi, John A Morris, et al.
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