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Journal of Molecular Recognition : JMR|August 11, 2015
Parameterization of an effective potential for protein-ligand binding from host-guest affinity dataLauren Wickstrom, Nanjie Deng, Peng He, et al.
Protein Science : a Publication of the Protein Society|August 10, 2016
Allosteric HIV-1 integrase inhibitors promote aberrant protein multimerization by directly mediating inter-subunit interactions: Structural and thermodynamic modeling studiesNanjie Deng, Ashley Hoyte, Yara E Mansour, et al.
Journal of Computer-Aided Molecular Design|February 8, 2014
Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challengeEmilio Gallicchio, Nanjie Deng, Peng He, et al.
Journal of Computer-Aided Molecular Design|August 27, 2016
Large scale free energy calculations for blind predictions of protein-ligand binding: the D3R Grand Challenge 2015Nanjie Deng, William F Flynn, Junchao Xia, et al.
Journal of Computer-Aided Molecular Design|March 6, 2014
Blind prediction of HIV integrase binding from the SAMPL4 challengeDavid L Mobley, Shuai Liu, Nathan M Lim, et al.
The Journal of Physical Chemistry. B|September 6, 2014
Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV proteaseNanjie Deng, Stefano Forli, Peng He, et al.
Journal of Computer-Aided Molecular Design|March 9, 2022
Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsidQinfang Sun, Avik Biswas, R S K Vijayan, et al.
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